Study of Helicobacter pylori genotype status in cows, sheep, goats and human beings

BMC Gastroenterology

Table 3 Sequence identity matrix of partial ureC gene of Iranian ruminant Helicobacter pylori in comparison with 8 known human reference sequences

Seq	Cow-1	Cow-2	Cow-3	Sheep-1	Sheep-2	Sheep-3	FN598874-Germany	CP003476-USA	DQ462665-Iran	GU445163-Iran	M60398-France	NC017361-S Africa	DQ141576-China	AB664954-Japan
Cow-1	ID	0.999	1	0.989	0.987	0.991	0.953	0.962	0.932	0.941	0.928	0.920	0.926	0.926
Cow-2	0.999	ID	0.999	0.987	0.988	0.986	0.950	0.966	0.936	0.940	0.929	0.918	0.924	0.923
Cow-3	1	0.999	ID	0.992	0.986	0.993	0.927	0.964	0.932	0.944	0.930	0.916	0.922	0.923
Sheep-1	0.989	0.987	0.991	ID	1	0.998	0.983	0.979	0.976	0.973	0.967	0.937	0.952	0.954
Sheep-2	0.987	0.988	0.986	1	ID	0.999	0.985	0.981	0.978	0.981	0.966	0.934	0.958	0.959
Sheep-3	0.991	0.986	0.993	0.998	0.999	ID	0.980	0.983	0.969	0.980	0.964	0.929	0.961	0.962
FN598874-Germany	0.953	0.950	0.957	0.983	0.985	0.980	ID	0.986	0.992	0.991	0.985	0.983	0.976	0.984
CP003476-USA	0.962	0.966	0.964	0.979	0.981	0.983	0.986	ID	0.990	0.993	0.984	0.979	0.980	0.983
DQ462665-Iran	0.932	0.936	0.932	0.976	0.978	0.969	0.992	0.990	ID	1	0.982	0.969	0.983	0.986
GU445163-Iran	0.941	0.940	0.944	0.973	0.981	0.980	0.991	0.993	1	ID	0.985	0.970	0.986	0.989
M60398-France	0.928	0.929	0.930	0.967	0.966	0.964	0.985	0.984	0.982	0.985	ID	0.975	0.990	0.991
NC017361-S Africa	0.920	0.918	0.916	0.937	0.934	0.929	0.983	0.979	0.969	0.970	0.975	ID	0.993	0.989
DQ141576-China	0.926	0.924	0.922	0.952	0.958	0.961	0.976	0.980	0.983	0.986	0.990	0.993	ID	0.994
AB664954-Japan	0.926	0.923	0.923	0.954	0.959	0.962	0.984	0.983	0.986	0.989	0.991	0.989	0.994	ID

ISSN: 1471-230X